Configure Image
 
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label area width:characters
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Display chromosome ideogram above main graphic
Show light blue vertical guidelines, or light red vertical window separators in multi-region view
Display labels to the left of items in tracks
Display description above each track
Show track controls under main graphic
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Next/previous exon navigation
Show exon numbers
Enable highlight with drag-and-select (if unchecked, drag-and-select always zooms to selection)

Configure Tracks on UCSC Genome Browser: Zea mays B73 AGPv3 (zeaMay_b73_v3)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Short Match Perfect Matches to Short Sequence (TATAWAAR)
-   Genes and Gene Predictions    
External Gene Info Links Click for external MaizeGDB and Plaza gene pages
Gene Models (Ensembl) Gene Models (from Ensembl/Gramene)
Gene Names Gene Names
MouseOver Gene Info MouseOver Gene Info (composite info from maizeGDB 6/17; KEKyle & HWBass)
Plaza Gene IDs Plaza Gene IDs
-   Variation and Repeats    
Clean Repeats (Ensembl) Repeats excluding dust, from plants.ensembl.org
Repeats (Ensembl) Repeats from plants.ensembl.org
Variation (Ensembl) Sequence variation from Ensembl (HapMap2 from Panzea)
-   Experimental Tracks    
1 EARSHOOT DNS 1 DNSca ES (1-2 cm Field Grown Earshoot, DNS-seq=[Light- Heavy], FSU nuprime, 2017)
1 Earshoot DNS iSeg-neg 1 FESDNSca neg iseg v180110 (segments for blue/pos MSF, MNase HS peaks)
1 Earshoot DNS iSeg-pos 1 FESDNSca pos iseg v180110 (segments for blue/pos MSF, MNase HS peaks)
2 COLEOP NODE DNS 2 DNSca CN (CN 4-5 days after planting, 0.5 cm section, spear stage, greenhouse, DNS-seq=[Light- Heavy], FSU nuprime, 2017)
2 Coleop Node DNS iSeg-neg 2 FCNDNSca neg iseg v180110
2 Coleop Node DNS iSeg-pos 2 FCNDNSca pos iseg v180110 (segments for blue/pos MSF, MNase HS peaks)
3 ROOT TIP DNS 3 DNSca RT v180110 (1 mm Root Tip, DNS-seq=[Light- Heavy], FSU nuprime, 2017, supplemented w additional light reads for v180110)
3 Root Tip DNS iSeg-neg 3 FRTDNSca neg iseg v180110 (segments for blue/pos MSF, MNase HS peaks)
3 Root Tip DNS iSeg-pos 3 FRTDNSca pos iseg v180110 (segments for blue/pos MSF, MNase HS peaks)
4 ENDOSPERM DNS 4 DNSca EN v180110 (15 DAP Endosperm, DNS-seq=[Light- Heavy], FSU nuprime, 2017)
4 Endosperm DNS iSeg-neg 4 FENDNSca neg iseg v180110 (segments for blue/pos MSF, MNase HS peaks)
4 Endosperm DNS iSeg-pos 4 FENDNSca pos iseg v180110 (segments for blue/pos MSF, MNase HS peaks)
GC Percent Percent GC in 100bp windows
RepliSeq 1mm Root Tip RepliSeq 1mm Root Tip