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Configure Tracks on UCSC Genome Browser: Zea mays B73 AGPv5 (zeaMay_b73_v5)
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Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Short Match Perfect Matches to Short Sequence (TATAWAAR)
-   Genes and Gene Predictions    
GENE Models eb eb Genes [from 'eb' gff3 to bb ss, b73v5, feb 2021]
Gene Names Gene Names
MouseOver Gene Info MouseOver Gene Info (composite info from maizeGDB 6/17; KEKyle & HWBass)
-   Variation and Repeats    
TE B73v5 NAM Repeats TE B73v5 NAM Repeats [ parsed from Hufford--Dawe, BioRxiv 2021, TE & Repeats EDTA, Ayush Singh, HWB, Mar. 2021 ]
TE B73v5 NAM Repeats Searchable TE B73v5 NAM Repeats Searchable
-   Experimental Tracks    
DAP-seq DAPseq COVERAGE From Ricci, Galli, via CyVerse
DAP-seq Peaks DAPseq Peaks From Ricci, Galli, via CyVerse
DNA Rep Timing Classes DNA Replicaiton Timing Classes, segmented by RepliScan from 1mm RootTip Early, Middle, Late S.
DNA Rep Timing Profiles DNA Replication Timing Profiles (E,M,L) 0-1mm Root Tip [Wear et al., Plant Cell, 2017, aligned to B73v5, EE Wear, J Song, 2020]
MNase Digest Levels Coverage Single Digest Levels
MNase Digest Levels Peaks Coverage Single Digest Levels Peaks
MNase DNS NUCORT MNase DNS-seq Differential Nuclease Sensitivity Profiles
MNase DNS RM-PNAS16 MNase DNS-seq Differential Nuclease Sensitivity Profiles
MNase DNS-seq Peaks MNase DNS-seq Differential Nuclease Sensitivity Profiles Peaks
MNase Frenters FRENTERs (Fragment Centers) Coverage Heavy Light-large, Light-small, vhfs521c
MNase MOA-seq MNase MOA-seq Earshoot Coverage (Savadel et al., 2021)
MNase MOA-seq Motifs MOA-seq Earshoot MOTIFs (blastover from B73v3, Savadel et al., 2021)
MNase MOA-seq Peaks MNase MOA-Seq Earshoot iSeg Peaks (Savadel et al., 2021)