Configure Image
 
image width:pixels
label area width:characters
text size:
Display chromosome ideogram above main graphic
Show light blue vertical guidelines, or light red vertical window separators in multi-region view
Display labels to the left of items in tracks
Display description above each track
Show track controls under main graphic
Next/previous item navigation
Next/previous exon navigation
Show exon numbers
Enable highlight with drag-and-select (if unchecked, drag-and-select always zooms to selection)

Configure Tracks on UCSC Genome Browser: Zea mays W22 v1 (zeaMay_w22_v1)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
G4 motifs G-Quadruplex Motifs from quadparser (Andorf & Bass)
GC Percent GC Percent in 100-bp nonoverlapping windows
Mapability Mapability based on 50mers and alignQual>10
Short Match Perfect Matches to Short Sequence (TATAWAAR)
-   Genes and Gene Predictions    
MAKERP_all All Gene Predictions from MAKERP (Jiao and Ware, CSHL)
MAKERP_highConfidence High Quality Gene Predictions from MAKERP (Jiao and Ware, CSHL)
-   Expression and Regulation    
DNSseq densities DNSseq reads per million (MNase-seq using light and heavy digestion levels, Vera and Bass)
DNSseq densities by size DNSseq reads per million by fragment size (MNase-seq using light and heavy digestion levels, Vera and Bass)
DNSseq densities qnorm DNSseq reads per million, quantile normalized (MNase-seq using light and heavy digestion levels, Vera and Bass)
DNSseq Hypersensitive Sites MNase-hypersensitive sites called from DNSseq data by MACS2 using an FDR cutoff of 0.01
DNSseq sensitivity DNSseq sensitivity, light-heavy (MNase-seq using light and heavy digestion levels, Vera and Bass)
Leaf RNAseq densities RNAseq read densities, Leaf sections (Brutnell, DDPSC)
MNase-seq alignments DNSseq alignments (MNase-seq using light and heavy digestion levels, Vera and Bass)
Seedling RNAseq densities RNAseq read densities, Seedlings (Brutnell, DDPSC)
-   Variation and Repeats    
Repeat Masker Repeat Masker Repeats